GENIE BPC data are updated periodically to add variables and reflect additional data cleaning. Each time the data are updated the data release version number is incremented. The `synapse_version()` function will get available version numbers for each cohort to help the user determine what is the most recent version for each cohort.
Arguments
- cohort
Vector specifying the cohort(s) of interest. Cohorts must be one of "NSCLC" (Non-Small Cell Lung Cancer), "CRC" (Colorectal Cancer), or "BrCa" (Breast Cancer), "PANC" (Pancreatic Cancer), "Prostate" (Prostate Cancer), and "BLADDER" (Bladder Cancer).
- most_recent
Indicates whether the function will return only the most recent version number for each cohort (`most_recent` = TRUE) or all available version numbers for each cohort (`most_recent`= FALSE)
Value
Returns a table containing the available versions for each cohort. Consortium releases are restricted to GENIE BPC consortium members.
Details
Specifies the version numbers available for each cancer cohort. Version numbers are specified as part of the call to `pull_data_synapse()`.
Examples
synapse_version()
#> # A tibble: 14 × 4
#> cohort version release_date versions_returned
#> <chr> <chr> <chr> <chr>
#> 1 BLADDER v1.1-consortium 2022-11 All Versions
#> 2 BLADDER v1.2-consortium 2023-11 All Versions
#> 3 BrCa v1.1-consortium 2021-10 All Versions
#> 4 BrCa v1.2-consortium 2022-10 All Versions
#> 5 CRC v2.0-public 2022-10 All Versions
#> 6 CRC v1.3-consortium 2024-02 All Versions
#> 7 NSCLC v1.1-consortium 2020-10 All Versions
#> 8 NSCLC v2.0-public 2022-05 All Versions
#> 9 NSCLC v2.2-consortium 2024-02 All Versions
#> 10 NSCLC v3.1-consortium 2024-04 All Versions
#> 11 PANC v1.1-consortium 2022-02 All Versions
#> 12 PANC v1.2-consortium 2023-01 All Versions
#> 13 Prostate v1.1-consortium 2022-03 All Versions
#> 14 Prostate v1.2-consortium 2023-01 All Versions
synapse_version(most_recent = TRUE)
#> # A tibble: 6 × 4
#> cohort version release_date versions_returned
#> <chr> <chr> <chr> <chr>
#> 1 BLADDER v1.2-consortium 2023-11 Most Recent Versions
#> 2 BrCa v1.2-consortium 2022-10 Most Recent Versions
#> 3 CRC v1.3-consortium 2024-02 Most Recent Versions
#> 4 NSCLC v3.1-consortium 2024-04 Most Recent Versions
#> 5 PANC v1.2-consortium 2023-01 Most Recent Versions
#> 6 Prostate v1.2-consortium 2023-01 Most Recent Versions