Package index • genieBPC

genieBPC Functions

Functions for abstracting and manipulating GENIE BPC data

synapse_version(): Return list of available GENIE BPC data releases

pull_data_synapse(): Obtain clinical & genomic data files for GENIE BPC Project

create_analytic_cohort(): Select cohort of patients for analysis

select_unique_ngs(): Selecting corresponding unique next generation sequencing reports

drug_regimen_sunburst(): Visualize drug regimen sequences in a sunburst plot

check_genie_access(): Check Access to GENIE Data

drug_regimen_list: List of Drug Regimen Names by Cohort

genie_panels: Genomic Panels Included in GENIE BPC Data

cohort_institution: List of Institutions by Cohort

nsclc_test_data: Simulated fake GENIE BPC data for function examples and tests

regimen_abbreviations: List of Drug Regimen Abbreviations

set_synapse_credentials(): Connect to 'Synapse' API

synapse_tables: 'Synapse' table IDs