Skip to contents

genieBPC Functions

Functions for abstracting and manipulating GENIE BPC data

synapse_version()
Return list of available GENIE BPC data releases
pull_data_synapse()
Obtain clinical & genomic data files for GENIE BPC Project
create_analytic_cohort()
Select cohort of patients for analysis
select_unique_ngs()
Selecting corresponding unique next generation sequencing reports
drug_regimen_sunburst()
Visualize drug regimen sequences in a sunburst plot
check_genie_access()
Check Access to GENIE Data
drug_regimen_list
List of Drug Regimen Names by Cohort
genie_panels
Genomic Panels Included in GENIE BPC Data
nsclc_test_data
Simulated fake GENIE BPC data for function examples and tests
regimen_abbreviations
List of Drug Regimen Abbreviations
set_synapse_credentials()
Connect to 'Synapse' API
synapse_tables
'Synapse' table IDs